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	<title>The Lacunae</title>
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	<link>http://thelacunae.wordpress.com</link>
	<description>My thoughts on bioinformatics, technology, music, Laban, and life in general</description>
	<lastBuildDate>Sat, 06 Feb 2010 12:00:48 +0000</lastBuildDate>
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		<title>The Lacunae</title>
		<link>http://thelacunae.wordpress.com</link>
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		<item>
		<title>A Kuhnian look at the iPad</title>
		<link>http://thelacunae.wordpress.com/2010/02/06/a-kuhnian-look-at-the-ipad/</link>
		<comments>http://thelacunae.wordpress.com/2010/02/06/a-kuhnian-look-at-the-ipad/#comments</comments>
		<pubDate>Sat, 06 Feb 2010 12:00:48 +0000</pubDate>
		<dc:creator>Johan</dc:creator>
				<category><![CDATA[Philosophy of Science]]></category>
		<category><![CDATA[Tech]]></category>
		<category><![CDATA[Apple]]></category>
		<category><![CDATA[Computer interfaces]]></category>
		<category><![CDATA[Computer problems]]></category>
		<category><![CDATA[Google]]></category>
		<category><![CDATA[iPad]]></category>
		<category><![CDATA[iPhone]]></category>
		<category><![CDATA[Kuhn]]></category>
		<category><![CDATA[Mac OS X]]></category>

		<guid isPermaLink="false">http://thelacunae.wordpress.com/?p=134</guid>
		<description><![CDATA[In case anyone has missed it; Apple announced their new tablet computer last week. They call it the iPad. This has released a massive wave of comments of all kinds across the internet, where some has been calling the device &#8230; <a href="http://thelacunae.wordpress.com/2010/02/06/a-kuhnian-look-at-the-ipad/">Continue reading <span class="meta-nav">&#8594;</span></a><img alt="" border="0" src="http://stats.wordpress.com/b.gif?host=thelacunae.wordpress.com&amp;blog=8806057&amp;post=134&amp;subd=thelacunae&amp;ref=&amp;feed=1" width="1" height="1" />]]></description>
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		<slash:comments>0</slash:comments>
	
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			<media:title type="html">Johan</media:title>
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	</item>
		<item>
		<title>HMMER3 released &#8211; with a pre-compiled binary!</title>
		<link>http://thelacunae.wordpress.com/2009/11/16/hmmer3-released-with-a-pre-compiled-binary/</link>
		<comments>http://thelacunae.wordpress.com/2009/11/16/hmmer3-released-with-a-pre-compiled-binary/#comments</comments>
		<pubDate>Mon, 16 Nov 2009 18:09:06 +0000</pubDate>
		<dc:creator>Johan</dc:creator>
				<category><![CDATA[Bioinformatics]]></category>
		<category><![CDATA[Research]]></category>
		<category><![CDATA[HMMER]]></category>
		<category><![CDATA[Linux]]></category>
		<category><![CDATA[Open source]]></category>

		<guid isPermaLink="false">http://thelacunae.wordpress.com/?p=128</guid>
		<description><![CDATA[As I have recently complained about open source software coming without pre-compiled binaries, I salute the release of HMMER beta 3, which has a pre-compiled Intel/Linux tar-ball. This is exactly the kind of convenience measures I have asked for, and thus I wanted to state that clearly here. Well done, Sean Eddy and company! <a href="http://thelacunae.wordpress.com/2009/11/16/hmmer3-released-with-a-pre-compiled-binary/">Continue reading <span class="meta-nav">&#8594;</span></a><img alt="" border="0" src="http://stats.wordpress.com/b.gif?host=thelacunae.wordpress.com&amp;blog=8806057&amp;post=128&amp;subd=thelacunae&amp;ref=&amp;feed=1" width="1" height="1" />]]></description>
		<wfw:commentRss>http://thelacunae.wordpress.com/2009/11/16/hmmer3-released-with-a-pre-compiled-binary/feed/</wfw:commentRss>
		<slash:comments>0</slash:comments>
	
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			<media:title type="html">Johan</media:title>
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	</item>
		<item>
		<title>Swine flu vaccination program &#8211; is it worth it?</title>
		<link>http://thelacunae.wordpress.com/2009/11/08/swine-flu-vaccination-program-is-it-worth-it/</link>
		<comments>http://thelacunae.wordpress.com/2009/11/08/swine-flu-vaccination-program-is-it-worth-it/#comments</comments>
		<pubDate>Sun, 08 Nov 2009 15:00:39 +0000</pubDate>
		<dc:creator>Johan</dc:creator>
				<category><![CDATA[News]]></category>
		<category><![CDATA[Politics]]></category>
		<category><![CDATA[Statistics]]></category>
		<category><![CDATA[H1N1]]></category>
		<category><![CDATA[Swine flu]]></category>
		<category><![CDATA[Vaccination]]></category>
		<category><![CDATA[Vaccines]]></category>

		<guid isPermaLink="false">http://thelacunae.wordpress.com/?p=122</guid>
		<description><![CDATA[One might ask oneself if the public vaccination program in Sweden (and in many other countries) is worth the costs of it. Of course, this is not an easy question, as many parameters plays a role in this decision. How &#8230; <a href="http://thelacunae.wordpress.com/2009/11/08/swine-flu-vaccination-program-is-it-worth-it/">Continue reading <span class="meta-nav">&#8594;</span></a><img alt="" border="0" src="http://stats.wordpress.com/b.gif?host=thelacunae.wordpress.com&amp;blog=8806057&amp;post=122&amp;subd=thelacunae&amp;ref=&amp;feed=1" width="1" height="1" />]]></description>
		<wfw:commentRss>http://thelacunae.wordpress.com/2009/11/08/swine-flu-vaccination-program-is-it-worth-it/feed/</wfw:commentRss>
		<slash:comments>0</slash:comments>
	
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			<media:title type="html">Johan</media:title>
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		<item>
		<title>An unusual error?</title>
		<link>http://thelacunae.wordpress.com/2009/10/19/an-unusual-error/</link>
		<comments>http://thelacunae.wordpress.com/2009/10/19/an-unusual-error/#comments</comments>
		<pubDate>Mon, 19 Oct 2009 18:54:37 +0000</pubDate>
		<dc:creator>Johan</dc:creator>
				<category><![CDATA[Bioinformatics]]></category>
		<category><![CDATA[Research]]></category>
		<category><![CDATA[HMMER]]></category>

		<guid isPermaLink="false">http://thelacunae.wordpress.com/?p=120</guid>
		<description><![CDATA[I just ran into a problem using HMMER, where it aborts the building of an HMM-profile (using hmmbuild) with this line: "FATAL: illegal state transition B-&#62;E in traceback" Is there anyone who has seen this HMMER error before? Anyone who know what it means and/or how to solve it? Please let me know as soon as possible. <a href="http://thelacunae.wordpress.com/2009/10/19/an-unusual-error/">Continue reading <span class="meta-nav">&#8594;</span></a><img alt="" border="0" src="http://stats.wordpress.com/b.gif?host=thelacunae.wordpress.com&amp;blog=8806057&amp;post=120&amp;subd=thelacunae&amp;ref=&amp;feed=1" width="1" height="1" />]]></description>
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		<slash:comments>2</slash:comments>
	
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			<media:title type="html">Johan</media:title>
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		<item>
		<title>Solving problems in seconds</title>
		<link>http://thelacunae.wordpress.com/2009/10/18/solving-problems-in-seconds/</link>
		<comments>http://thelacunae.wordpress.com/2009/10/18/solving-problems-in-seconds/#comments</comments>
		<pubDate>Sun, 18 Oct 2009 14:46:22 +0000</pubDate>
		<dc:creator>Johan</dc:creator>
				<category><![CDATA[Bioinformatics]]></category>
		<category><![CDATA[Biology]]></category>
		<category><![CDATA[Research]]></category>
		<category><![CDATA[Computer problems]]></category>
		<category><![CDATA[Linux]]></category>
		<category><![CDATA[Perl]]></category>
		<category><![CDATA[Scripting]]></category>
		<category><![CDATA[Unix]]></category>

		<guid isPermaLink="false">http://thelacunae.wordpress.com/?p=112</guid>
		<description><![CDATA[Sometimes a given solution to a problem lies much closer at hand than you expect. Thanks to Perl I can now be much more efficient doing repetitive tasks. <a href="http://thelacunae.wordpress.com/2009/10/18/solving-problems-in-seconds/">Continue reading <span class="meta-nav">&#8594;</span></a><img alt="" border="0" src="http://stats.wordpress.com/b.gif?host=thelacunae.wordpress.com&amp;blog=8806057&amp;post=112&amp;subd=thelacunae&amp;ref=&amp;feed=1" width="1" height="1" />]]></description>
		<wfw:commentRss>http://thelacunae.wordpress.com/2009/10/18/solving-problems-in-seconds/feed/</wfw:commentRss>
		<slash:comments>1</slash:comments>
	
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			<media:title type="html">Johan</media:title>
		</media:content>
	</item>
		<item>
		<title>Why the LP sounds better than the CD</title>
		<link>http://thelacunae.wordpress.com/2009/10/14/why-the-lp-sounds-better-than-the-cd/</link>
		<comments>http://thelacunae.wordpress.com/2009/10/14/why-the-lp-sounds-better-than-the-cd/#comments</comments>
		<pubDate>Wed, 14 Oct 2009 09:45:59 +0000</pubDate>
		<dc:creator>Johan</dc:creator>
				<category><![CDATA[Art]]></category>
		<category><![CDATA[Music]]></category>
		<category><![CDATA[CD]]></category>
		<category><![CDATA[iPod]]></category>
		<category><![CDATA[LP]]></category>
		<category><![CDATA[Mastering]]></category>
		<category><![CDATA[MP3]]></category>
		<category><![CDATA[Music industry]]></category>

		<guid isPermaLink="false">http://thelacunae.wordpress.com/?p=93</guid>
		<description><![CDATA[One would think that the refinement of digital audio would make the CD:s of today sound absolutely fantastic, compared to the now sort-of-dead LP. It doesn't, LPs sounds warm and dynamic compared to the CDs. Yes, it pops and occasionally sways, but it is clearly more living than the modern CD sound. But why is this? This article makes a journey through the listening habits of the last three decades. <a href="http://thelacunae.wordpress.com/2009/10/14/why-the-lp-sounds-better-than-the-cd/">Continue reading <span class="meta-nav">&#8594;</span></a><img alt="" border="0" src="http://stats.wordpress.com/b.gif?host=thelacunae.wordpress.com&amp;blog=8806057&amp;post=93&amp;subd=thelacunae&amp;ref=&amp;feed=1" width="1" height="1" />]]></description>
		<wfw:commentRss>http://thelacunae.wordpress.com/2009/10/14/why-the-lp-sounds-better-than-the-cd/feed/</wfw:commentRss>
		<slash:comments>0</slash:comments>
	
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			<media:title type="html">Johan</media:title>
		</media:content>

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			<media:title type="html">The solution to this audio problem?</media:title>
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		<item>
		<title>LogoMat-M, or how I started to hate source code and opted for precompiled binaries</title>
		<link>http://thelacunae.wordpress.com/2009/10/08/logomat-m-or-how-i-started-to-hate-source-code-and-opted-for-precompiled-binaries/</link>
		<comments>http://thelacunae.wordpress.com/2009/10/08/logomat-m-or-how-i-started-to-hate-source-code-and-opted-for-precompiled-binaries/#comments</comments>
		<pubDate>Thu, 08 Oct 2009 07:22:03 +0000</pubDate>
		<dc:creator>Johan</dc:creator>
				<category><![CDATA[Bioinformatics]]></category>
		<category><![CDATA[Tech]]></category>
		<category><![CDATA[Computer problems]]></category>
		<category><![CDATA[Open source]]></category>
		<category><![CDATA[Research]]></category>

		<guid isPermaLink="false">http://thelacunae.wordpress.com/?p=85</guid>
		<description><![CDATA[Open source software is designed with the goal of being open. What many times is forgotten is that good software should also be easy to use, or at least possible to install. Why not supply pre-compiled binaries for common platforms? <a href="http://thelacunae.wordpress.com/2009/10/08/logomat-m-or-how-i-started-to-hate-source-code-and-opted-for-precompiled-binaries/">Continue reading <span class="meta-nav">&#8594;</span></a><img alt="" border="0" src="http://stats.wordpress.com/b.gif?host=thelacunae.wordpress.com&amp;blog=8806057&amp;post=85&amp;subd=thelacunae&amp;ref=&amp;feed=1" width="1" height="1" />]]></description>
		<wfw:commentRss>http://thelacunae.wordpress.com/2009/10/08/logomat-m-or-how-i-started-to-hate-source-code-and-opted-for-precompiled-binaries/feed/</wfw:commentRss>
		<slash:comments>5</slash:comments>
	
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			<media:title type="html">Johan</media:title>
		</media:content>

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		<title>Laban who? 28/8</title>
		<link>http://thelacunae.wordpress.com/2009/08/28/laban-who-288/</link>
		<comments>http://thelacunae.wordpress.com/2009/08/28/laban-who-288/#comments</comments>
		<pubDate>Fri, 28 Aug 2009 13:31:56 +0000</pubDate>
		<dc:creator>Johan</dc:creator>
				<category><![CDATA[Laban who?]]></category>
		<category><![CDATA[Comics]]></category>
		<category><![CDATA[Laban ut ur UNT]]></category>

		<guid isPermaLink="false">http://thelacunae.wordpress.com/?p=76</guid>
		<description><![CDATA[Another totally meaningless comic strip... <a href="http://thelacunae.wordpress.com/2009/08/28/laban-who-288/">Continue reading <span class="meta-nav">&#8594;</span></a><img alt="" border="0" src="http://stats.wordpress.com/b.gif?host=thelacunae.wordpress.com&amp;blog=8806057&amp;post=76&amp;subd=thelacunae&amp;ref=&amp;feed=1" width="1" height="1" />]]></description>
		<wfw:commentRss>http://thelacunae.wordpress.com/2009/08/28/laban-who-288/feed/</wfw:commentRss>
		<slash:comments>0</slash:comments>
	
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			<media:title type="html">Johan</media:title>
		</media:content>

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			<media:title type="html">laban5</media:title>
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	</item>
		<item>
		<title>Annika Dahlqvist &#8211; Enemy of logic and science?</title>
		<link>http://thelacunae.wordpress.com/2009/08/23/annika-dahlqvist-enemy-of-logic-and-science/</link>
		<comments>http://thelacunae.wordpress.com/2009/08/23/annika-dahlqvist-enemy-of-logic-and-science/#comments</comments>
		<pubDate>Sun, 23 Aug 2009 18:54:39 +0000</pubDate>
		<dc:creator>Johan</dc:creator>
				<category><![CDATA[Biology]]></category>
		<category><![CDATA[Politics]]></category>
		<category><![CDATA[Research]]></category>
		<category><![CDATA[Aftonbladet]]></category>
		<category><![CDATA[Annika Dahlqvist]]></category>
		<category><![CDATA[Diets]]></category>
		<category><![CDATA[H1N1]]></category>
		<category><![CDATA[Journalism]]></category>
		<category><![CDATA[LCHF]]></category>
		<category><![CDATA[Science scepticism]]></category>
		<category><![CDATA[Swine flu]]></category>
		<category><![CDATA[Vaccination]]></category>
		<category><![CDATA[Vaccines]]></category>

		<guid isPermaLink="false">http://thelacunae.wordpress.com/?p=80</guid>
		<description><![CDATA[Annika Dahlqvist, the doctor behind the LCHF diet, once again makes the front page of a Swedish tabloid. This time, she has decided to battle the vaccination program for the Swine flu. However, the method she pleads for is so unbelievably stupid that one becomes scared. <a href="http://thelacunae.wordpress.com/2009/08/23/annika-dahlqvist-enemy-of-logic-and-science/">Continue reading <span class="meta-nav">&#8594;</span></a><img alt="" border="0" src="http://stats.wordpress.com/b.gif?host=thelacunae.wordpress.com&amp;blog=8806057&amp;post=80&amp;subd=thelacunae&amp;ref=&amp;feed=1" width="1" height="1" />]]></description>
		<wfw:commentRss>http://thelacunae.wordpress.com/2009/08/23/annika-dahlqvist-enemy-of-logic-and-science/feed/</wfw:commentRss>
		<slash:comments>4</slash:comments>
	
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			<media:title type="html">Johan</media:title>
		</media:content>
	</item>
		<item>
		<title>Laban who? 21/8</title>
		<link>http://thelacunae.wordpress.com/2009/08/21/laban-who-218/</link>
		<comments>http://thelacunae.wordpress.com/2009/08/21/laban-who-218/#comments</comments>
		<pubDate>Fri, 21 Aug 2009 13:30:55 +0000</pubDate>
		<dc:creator>Johan</dc:creator>
				<category><![CDATA[Laban who?]]></category>
		<category><![CDATA[Comics]]></category>
		<category><![CDATA[Laban ut ur UNT]]></category>

		<guid isPermaLink="false">http://thelacunae.wordpress.com/?p=74</guid>
		<description><![CDATA[Laban who? no. 4 <a href="http://thelacunae.wordpress.com/2009/08/21/laban-who-218/">Continue reading <span class="meta-nav">&#8594;</span></a><img alt="" border="0" src="http://stats.wordpress.com/b.gif?host=thelacunae.wordpress.com&amp;blog=8806057&amp;post=74&amp;subd=thelacunae&amp;ref=&amp;feed=1" width="1" height="1" />]]></description>
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		<slash:comments>0</slash:comments>
	
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			<media:title type="html">Johan</media:title>
		</media:content>

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